"EDirect for PubMed" Class Materials
Please note: following the release of the new version of PubMed, the results returned by E-utilities queries of PubMed may differ slightly from those returned in the web version of PubMed. A new PubMed API is currently under development: more information will be announced when available.
See upcoming offerings and a description of this class on the Classes page.
March 2018 series:
- Part 1: Getting PubMed Data (March 5, 2018)
- Part 2: Extracting Data from XML (March 8, 2018)
- Part 3: Formatting Results and Unix Tools (March 12, 2018)
- Part 4: xtract Conditional Arguments (March 15, 2018)
- Part 5: Developing and Building Scripts (March 19, 2018)
Please feel free to re-use, redistribute, or modify these class materials:
- Handouts (text)
- Sample code for class examples
- Slides (PowerPoint)
- Slides, accessible versions (PowerPoint)
- Script (MS Word)
The following online resources are referenced in this class: